PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137159.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 180aa    MW: 20039.8 Da    PI: 7.6705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-111663555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + +E++RR +++  ++eL +llP+    +   l+  + L +A +YIk+Lq
  XP_009137159.1 16 RKTIEKNRRIQMKALYSELNSLLPQT---SRAPLTLPDQLDEAANYIKKLQ 63
                    5789*********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.0641162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-91677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-101680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-41768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-51967No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDQGLSNTSQ ARSVDRKTIE KNRRIQMKAL YSELNSLLPQ TSRAPLTLPD QLDEAANYIK  60
KLQVNVEKMT ERKGKLAATG SSPMSSSVDV SVPRRLPKIE IQETGPILHI FLVTSVEHKF  120
IFHEIISVLT EESGAEITHA GSSTVDDTVF HTLHCKVEDC DYGASSRISE SLKKLVNKFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728780.0AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137159.11e-131PREDICTED: transcription factor bHLH36-like
RefseqXP_013741406.11e-131transcription factor bHLH162-like
SwissprotF4JIJ71e-80BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3P6A6F51e-130A0A3P6A6F5_BRACM; Uncharacterized protein
TrEMBLM4FCH31e-130M4FCH3_BRARP; Uncharacterized protein
STRINGBra038792.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-81bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]