PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137089.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 248aa    MW: 28809.8 Da    PI: 7.2993
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34301212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SFvRQLn+YgF+k++ e+         weF+++ F  g+++ll++
  XP_009137089.1  30 FLIKTFEIVEDPSTDHIVSWNRGGTSFVVWDLHSFSEFLLPRHFKHSNFSSFVRQLNTYGFRKIEAER---------WEFANEGFLLGQRHLLKS 115
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr++s
  XP_009137089.1 116 IKRRAS 121
                     ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-3626119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5526119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3326119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2930119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNPFLHPEDD PPPSPPKPVE GLHEIGPPPF LIKTFEIVED PSTDHIVSWN RGGTSFVVWD  60
LHSFSEFLLP RHFKHSNFSS FVRQLNTYGF RKIEAERWEF ANEGFLLGQR HLLKSIKRRA  120
SFALSSSSIQ DPCVELRKEK QLLLMELVSL RQQQETNKSY IRAMEQRIEG AERKQRKMMS  180
FLARAMQSPS FLHQLLKQRD MRVKELEDEA AERGRGSSVS ELEALALEMQ GYGKQKNVKE  240
EEDPLNQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222812118122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137089.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-132HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLM4D8L90.0M4D8L9_BRARP; Uncharacterized protein
STRINGBra012829.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-132heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]