PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136896.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 513aa    MW: 57185.2 Da    PI: 5.8224
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27285338256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  XP_009136896.1 285 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 338
                     689*****************.********************************96 PP
2Response_reg27.41.7e-103112316109
                     HHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
    Response_reg  16 qalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                     + le+ +y +v++++d +eal  + ++   +++ ++ ++ +  d  e +k +++++  lp i++++    +++ +++ +Ga +fl Kp +pe+l 
  XP_009136896.1  31 SKLESMDY-IVTTFSDESEALSAVVKSPesFHIAIVEVNTSAED--ESFKYLEAAKGLLPTIMISDDHCIATTMKCIALGAVEFLQKPLSPEKLK 122
                     568999**.***************776667********999988..899***99999************************************98 PP

                     H CS
    Response_reg 109 k 109
                     +
  XP_009136896.1 123 N 123
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011016.22515129IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.28E-1116130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-1229136No hitNo description
PfamPF000723.9E-629123IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-633128No hitNo description
PROSITE profilePS5129416.406281340IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-26283340IPR009057Homeodomain-like
SuperFamilySSF466892.33E-18283341IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-25285338IPR006447Myb domain, plants
PfamPF002491.4E-7287335IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVFTANDLSK WESFPKGLRV LLLDSAAETR SKLESMDYIV TTFSDESEAL SAVVKSPESF  60
HIAIVEVNTS AEDESFKYLE AAKGLLPTIM ISDDHCIATT MKCIALGAVE FLQKPLSPEK  120
LKNIWQHVVH KAFNDGGASV SESLKPVKDS VVSMINIDTN MTIDEKDPAP STPQLRQVSR  180
LLDQENRNCS VENVNSPTEK ENTEDHDIGE SKSVDTTNHE DNVIVKEENG DGEKEEEQGQ  240
TEEHKQEEGE TGDSVNFNKK EDETNKPINK SSGNKNLSSN KASRKKVDWT QELHKKFVQA  300
VEQLGVDQAI PSRILELMKV DGLTRHNVAS HLQKFRMHRR NILPKDDHNH RWIQSRENHR  360
QIQRQYNGFQ QQHRPVMAYP VWGLPGVHPP GAVPPLWPPA LPSAGQLPPW HFKPPYPTLN  420
GNTWGYPVGP PVTGTFFPPP ITGTFSTHPA NQLDEEMIDQ VVKEVISKPG MPLPLGLKPP  480
SPESVLTELS RQDISAVPSS SASCQINGSP RLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16286337758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136894.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136895.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136896.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136897.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLM4D8130.0M4D813_BRARP; Uncharacterized protein
STRINGBra012623.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]