PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136583.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 297aa    MW: 33033.7 Da    PI: 7.4365
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19211245135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_009136583.1 211 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 245
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-941297IPR016679Transcription factor, GATA, plant
SuperFamilySSF577165.7E-14204267No hitNo description
SMARTSM004016.7E-16205259IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82205241IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14209243IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.68E-14210258No hitNo description
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
PfamPF003206.9E-17211245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESVELSLTN METAVNADGA QNGDDFSVDD LLDFSSNDDV FFDDGAELKT QRNKGVSVSS  60
NDETTLKRSN DFSTACELDV PTDELAELEW LSNFVDDSFT PYSAPTKKPV WLTVDRRHPV  120
TPVNVGSCFK APLPVKIRTK RPRTGVNLWS SLTDSPSSSP TSSSSSSSGY SSHLWLSGAE  180
FLDEKAVERQ KNKKKKKQFL SWEAQSQTRR CSHCGVQKTP QWRAGPLGAK TLCNACGVRF  240
KSGRLLPEYR PACSPTFSSE LHSNHHRKVI EMRQKKETSR DADEPGMNRT VQAVQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136583.10.0PREDICTED: GATA transcription factor 6-like
RefseqXP_018513408.10.0PREDICTED: GATA transcription factor 6-like
SwissprotQ9SD381e-113GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A398A6910.0A0A398A691_BRACM; GATA transcription factor
TrEMBLM4D8R10.0M4D8R1_BRARP; Uncharacterized protein
STRINGBra012871.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.18e-90GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]