PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135632.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 337aa    MW: 37386.2 Da    PI: 7.8525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-075075127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ykt+ C  f   G C+ G+ C+FaHg+
  XP_009135632.1 50 YKTRMCVKFKS-GACRNGELCNFAHGM 75
                    89999**9999.*************95 PP
2zf-CCCH18.73.1e-061401541125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F+H
  XP_009135632.1 140 F-GeECPYGDRCNFIH 154
                     5.449*********** PP
3zf-CCCH382.9e-12220245127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC  f + G+C++Gd+C+FaHg+
  XP_009135632.1 220 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 245
                     8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-144782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-84880IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4364976IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-44975IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-45075IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455129157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-6129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-8131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-14217248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8217248IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7219245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713219246IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10220245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVDSMSNDQS ESQTMPQLKR PKLVDDNNTS WNVPSSNAPP VNKGTANIFY KTRMCVKFKS  60
GACRNGELCN FAHGMEDLRQ PPSNWQEIVG PPVQDREKER ERERERLSSV SGGNNSNNSG  120
NWEDDQKIIL RMKLCRKFCF GEECPYGDRC NFIHEDLSKF REENGKLRES LAISVVDPLS  180
VENGVVAFSQ QVEVVRQGGV PLPVPAPLNN GVGGVKTVFW KTRLCGKFEK GQCPFGDNCH  240
FAHGQAELLQ HSVGRVEGEA LNAVAASVSK PMVVPANEAF AMKPTAQVTA DSSGLNDEGR  300
RKKCLLKWSD SKKINRIYGD WIDDLPVGQK STKPVES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535211e-107AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135630.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
SwissprotQ9LT811e-159C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLM4CC150.0M4CC15_BRARP; Uncharacterized protein
STRINGBra001745.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-159C3H family protein