PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 355aa MW: 39489.4 Da PI: 7.6075 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 68 | 93 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C f G C+ G+ C+FaHg+ XP_009135630.1 68 YKTRMCVKFKS-GACRNGELCNFAHGM 93 89999**9999.*************95 PP | |||||||
2 | zf-CCCH | 18.7 | 3.1e-06 | 158 | 172 | 11 | 25 |
GTS.--TTTTT-SS-S CS zf-CCCH 11 rtG.tCkyGdrCkFaH 25 G +C+yGdrC+F+H XP_009135630.1 158 F-GeECPYGDRCNFIH 172 5.449*********** PP | |||||||
3 | zf-CCCH | 37.9 | 3e-12 | 238 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC f + G+C++Gd+C+FaHg+ XP_009135630.1 238 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 263 8**********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-14 | 65 | 100 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-8 | 66 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.436 | 67 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 67 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-4 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.455 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-6 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-8 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.713 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-7 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-10 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDSSYSDSRP YGVWNQTQMV DSMSNDQSES QTMPQLKRPK LVDDNNTSWN VPSSNAPPVN 60 KGTANIFYKT RMCVKFKSGA CRNGELCNFA HGMEDLRQPP SNWQEIVGPP VQDREKERER 120 ERERLSSVSG GNNSNNSGNW EDDQKIILRM KLCRKFCFGE ECPYGDRCNF IHEDLSKFRE 180 ENGKLRESLA ISVVDPLSVE NGVVAFSQQV EVVRQGGVPL PVPAPLNNGV GGVKTVFWKT 240 RLCGKFEKGQ CPFGDNCHFA HGQAELLQHS VGRVEGEALN AVAASVSKPM VVPANEAFAM 300 KPTAQVTADS SGLNDEGRRK KCLLKWSDSK KINRIYGDWI DDLPVGQKST KPVES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353521 | 1e-107 | AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135630.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 | ||||
Swissprot | Q9LT81 | 1e-171 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | M4CC15 | 0.0 | M4CC15_BRARP; Uncharacterized protein | ||||
STRING | Bra001745.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10066 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-170 | C3H family protein |