PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135563.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 353aa    MW: 40197.6 Da    PI: 7.4431
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.34.6e-2276135357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  XP_009135563.1  76 SRWNPTPDQLKALEELYQQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 135
                     7*****************99**************************************97 PP
2Wus_type_Homeobox115.23.1e-3775137365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q+k Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_009135563.1  75 SSRWNPTPDQLKALEELYQQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 137
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.04671136IPR001356Homeobox domain
SMARTSM003898.3E-673140IPR001356Homeobox domain
SuperFamilySSF466891.88E-1273141IPR009057Homeodomain-like
PfamPF000469.1E-2076135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-976135IPR009057Homeodomain-like
CDDcd000863.43E-677137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MWMMGYNEGG ADSFNGGRKL RPLIPRLSSC PTATGNTNSD HRFNMAVVTT MTAEQNKREL  60
MMLNSEPQHP PAMVSSRWNP TPDQLKALEE LYQQGTRTPS ADHIQQITAQ LRRYGKIEGK  120
NVFYWFQNHK ARERQKRRRQ MENGHDESVV TTTSLVSNQG FDKKDSKGYK VEHTKNWICS  180
VGCDTQQEKP HDHHHQEEPV SIAMVATKRN GRHGGDEIQS FPVRNARWHM MQLPPGLYPS  240
SQQQHNNHQL NLNSTTVSLN LSTSNSNVPA AKDTVTFSPS FLRTRGARNT EACDDNKDQE  300
QHEDCSNGEL EHQEQTLELF PLRKEGFCSN GGDDGKEKES GIQCFYEFLP LKN
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2513940.0AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135563.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
RefseqXP_013736498.10.0WUSCHEL-related homeobox 1 isoform X1
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A078IS840.0A0A078IS84_BRANA; BnaAnng11050D protein
TrEMBLA0A398A1R70.0A0A398A1R7_BRACM; Uncharacterized protein
TrEMBLM4CBW40.0M4CBW4_BRARP; Uncharacterized protein
STRINGBra001694.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]