PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135540.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 538aa    MW: 58629 Da    PI: 5.4035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31298356259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_009135540.1 298 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 356
                     7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33282358IPR003657WRKY domain
SuperFamilySSF1182907.45E-28290358IPR003657WRKY domain
PROSITE profilePS5081129.597292358IPR003657WRKY domain
SMARTSM007741.8E-36297357IPR003657WRKY domain
PfamPF031069.5E-27299356IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MFRFPVSLGG SRDETRHDQI TPLDERRVVV GEVDFFSDKR DRVSRENIND DEDDEASKVH  60
VEMESSRVED KDRSRDVNIG LNLLTANTGS DESTVDDGLS MDMEDKRAKF ENAQLQEELK  120
KMKIENQRLR EMLSQATNNF NSLQMQLVAV MRQQEQRNSS QDHLLATEGN AEGGKRQEVQ  180
TMVPRQFMDL GPSSGAAEQD AEVSSEERTM LRSGSPPLLL ENSNPRESGK RLLAREESPE  240
SESNAWGNPN KVTKHNPPSG SNNNNNGNRN LIDQSAAEAT MRKARVSVRA RSEATMITDG  300
CQWRKYGQKM AKGNPCPRAY YRCTMAGGCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA  360
AMAMASTTTA AASMLLSGSV SSQDNLMNPT NLLARAILPC SSSMATISAS APFPTITLDL  420
TNSPNGNNPN MTTNNPLMQF AQRPGFNPGV LPQVVGQGLY YNQQQSKFSG LQLPAQPLQM  480
AATSSMAESV SAASAAIASD PNFAAALAAA ITSIINGSSH QNNNSNNTNL ATSNGDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23284360176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465770.0KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135540.10.0PREDICTED: probable WRKY transcription factor 31
RefseqXP_009135548.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLM4DAS40.0M4DAS4_BRARP; Uncharacterized protein
STRINGBra013584.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31