PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135165.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 643aa    MW: 73844.6 Da    PI: 9.8147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-08482524140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W++eE ++l +++ ++++g   +W+ I  ++g+gRt +++
   XP_009135165.1 482 KQPWSKEEIDKLRKGIIKYPKGisrRWEVILDYIGTGRTVEEI 524
                      79*************************************9886 PP
2Myb_DNA-binding22.82.2e-07587630445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+   +  lv+a k + ++   +W+++a+ ++ g+t  qck ++ 
   XP_009135165.1 587 WSSVQERALVQALKTFTKEtsqRWERVAAAVP-GKTMVQCKKKFA 630
                      *****************99*************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.2E-1989190IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-19105210IPR001623DnaJ domain
SMARTSM002712.0E-16110186IPR001623DnaJ domain
PROSITE profilePS5007617.543111194IPR001623DnaJ domain
PfamPF002261.3E-16111191IPR001623DnaJ domain
CDDcd062573.31E-10113183IPR001623DnaJ domain
PRINTSPR006251.7E-8116134IPR001623DnaJ domain
PRINTSPR006251.7E-8134149IPR001623DnaJ domain
PRINTSPR006251.7E-8166186IPR001623DnaJ domain
PROSITE patternPS006360171190IPR018253DnaJ domain, conserved site
SuperFamilySSF466891.2E-6476525IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-6476525IPR009057Homeodomain-like
PROSITE profilePS500905.877477532IPR017877Myb-like domain
SMARTSM007173.1E-5481534IPR001005SANT/Myb domain
PfamPF002494.6E-7482524IPR001005SANT/Myb domain
CDDcd001671.38E-4484524No hitNo description
SMARTSM007177.1E-7583635IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-8584632IPR009057Homeodomain-like
CDDcd001675.82E-5587633No hitNo description
PROSITE profilePS500906.806587633IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-4587632IPR009057Homeodomain-like
PfamPF002495.3E-6587631IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MPRGRSDSAI KLITYSEELV DGKPFYAFSN SRPVKALNRE PAGHAFHSAA LKLHGFAEKP  60
TDGEGSHKKV GDDDKDEEYV FPSFNPYANN KGRKKKKKPG GTQQQQDHQQ DHYALLGLRN  120
LRYLATEDQI KKSYREAALK HHPDKQHAAL LLAEETEEAM EAKKDEIGSR FRAIQEAYEV  180
LMDRTKRKIF DSTDEFDDED CSPEEFFKVF GPAFKRIAKL SATASQRVPD LGDENTKLKD  240
VEKFYSFWYG FKSLREFPNG GKHDLEKADS RQERRWMGRE NAKKTAKDRK EDDVRIRNLV  300
DNAYRIDPRI AKREEEEKAK KQRKKEAKVM AEKKREEEAA EKEKMRKEEA KESAEKLKKD  360
KEKERKLLLK ERNRRRTISA HVLAQCLVSK EDVENLCMSL NIQQLQSLCD TMGNKQGIEL  420
AKVIKDHQAN SKEKENEKAN FKEKECEKAN VEPTKLDNTQ KKENEKADGD AKPTKLDNTK  480
KKQPWSKEEI DKLRKGIIKY PKGISRRWEV ILDYIGTGRT VEEILKATKT VLLQKPDSAK  540
AFDTFLEKRK PTVSIASPLS TREEELGESL PMENNGESSG SSDADGWSSV QERALVQALK  600
TFTKETSQRW ERVAAAVPGK TMVQCKKKFA ELKELIRSKK TGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135165.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLM4CB250.0M4CB25_BRARP; Uncharacterized protein
STRINGBra001404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-136DnaJ domain ;Myb-like DNA-binding domain