PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135022.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 297aa    MW: 33607.3 Da    PI: 8.0433
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G+C+yG rC++ H+
  XP_009135022.1 34 VCTFYQK-GICSYGTRCRYEHV 54
                    5******.***********997 PP
2zf-CCCH20.49e-0779100426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ fa+ G C++G++C+ +Hg
  XP_009135022.1  79 PICS-FAAAGDCPRGSQCPHMHG 100
                     7899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-53053IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-43155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1693456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54975102IPR000571Zinc finger, CCCH-type
SMARTSM003560.003976101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.7E-10125203IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.24E-9139210No hitNo description
CDDcd001620.00245143203No hitNo description
SMARTSM001848.7E-8144201IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.386144202IPR001841Zinc finger, RING-type
PfamPF000976.5E-8144201IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180168177IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.53231259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404231260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEYSHDSKHH ANNVCTFYQK GICSYGTRCR YEHVRTSQKR  60
DGDHHKALTL CYTHPREHPI CSFAAAGDCP RGSQCPHMHG DVCSTCGKKC LHPFRPEERE  120
EHTKECEKKQ KHIEALKKSQ EIECSVCLDR VLSKATPGER KFGLLTECHH PFCIQCIRNW  180
RSSAPVSGMD VNSTLRACPI CRKLSYFVVP SVVWYSSPEE KKEIIDVYKA KLRSIDCKHF  240
NFGNGSCPFG GSCFYKHAYT DGNLEEVVVR HLGSQEGETV IADSVAGLSE FLGRVHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135022.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_013736007.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A398A0D40.0A0A398A0D4_BRACM; Uncharacterized protein
STRINGBra001285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-175C3H family protein