PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134718.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 453aa    MW: 50143.8 Da    PI: 5.622
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35271192103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++e++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F +g+k+ll++
  XP_009134718.1  27 FLSKTYDMVDDPLTDEVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPER---------WEFANDGFVRGQKQLLKS 112
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_009134718.1 113 IIRRKPS 119
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-3322116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MRSICESVPA ANSSSASTTV VNSIPPFLSK TYDMVDDPLT DEVVSWSSGN NSFVVWNVPE  60
FAKQFLPKYF KHNNFSSFVR QLNTYGFRKV DPERWEFAND GFVRGQKQLL KSIIRRKPSQ  120
MQPQKKPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QGTEHHLQNV  180
GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FSQQSSEGNQ HISESNKKRR LPVEDQNGSH  240
GVNGLSRQIV RYQSSMNESA NSVLQQIQSM SSSRGCHEPL SNNHGSFLLG DVPNVSDNGR  300
SSNGASGVAF TDVSSNGAMK PHDPYAPADL LAPRQGAAAA SGSSSSDLAG CETDNGECLD  360
PMMVVLDEST ILGRDGTINE LLPGGEDSLW EQFFGESTET GNIDELVSGS MDNEMIMEQL  420
GLQSNLRNVL RNNQQMNHLT EQMGLLTSDA LRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262211624129Heat shock factor protein 1
5d5v_B1e-262211624129Heat shock factor protein 1
5d5v_D1e-262211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891850.0AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134718.10.0PREDICTED: heat stress transcription factor A-1e-like isoform X1
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLM4CA420.0M4CA42_BRARP; Uncharacterized protein
STRINGBra001071.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]