PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134712.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 379aa    MW: 42355.8 Da    PI: 7.3946
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.72.9e-114268127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  XP_009134712.1 42 PGEPDCSYYIRTGLCRFGSTCRFNHPR 68
                    5789*********************96 PP
2zf-CCCH37.73.5e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tGtCk+G +CkF+H++
  XP_009134712.1  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                     799********************96 PP
3zf-CCCH37.92.9e-12134158327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f+rtG+Ck+G++CkF+H++
  XP_009134712.1 134 EVDCAYFLRTGHCKFGATCKFNHPQ 158
                     578********************97 PP
4zf-CCCH37.24.9e-12258284127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G  CkF+H++
  XP_009134712.1 258 PGQPECQFYMKTGDCKFGTVCKFHHPR 284
                     5789*********************96 PP
5zf-CCCH27.36.1e-09304327124
                     --S---SGGGGTS--TTTTT-SS- CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFa 24 
                     ++++lC f++r+ +Ck+G++CkF+
  XP_009134712.1 304 PGEPLCVFYSRYRICKFGPSCKFH 327
                     589********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6994169IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-54168IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-84368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-64669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-44768IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-491112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99131159IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6131158IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22257285IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8259284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6261287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4263285IPR000571Zinc finger, CCCH-type
SMARTSM003560.32303329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.911303326IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-6305327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMINQE AMWQMNLSSD ETMELGSYPE RPGEPDCSYY IRTGLCRFGS  60
TCRFNHPRDR ELVIATAMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGS  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGA TCKFNHPQPQ PTTNLMVPTS GQQQSYPWSR  180
ASFIPTPRWQ DPSGFTPLMM PQGVVWNPYT GQLGSVSPSG TGNDHNNYRE LQQNESGSSV  240
PQGGIYALPS ESVFPERPGQ PECQFYMKTG DCKFGTVCKF HHPRDRQTPP PDCLLSPIGL  300
PLRPGEPLCV FYSRYRICKF GPSCKFHPPM GVFTYDNTAS ETDEVMKTTT GHSRRLSVSE  360
TRQAATISGQ DTTIDTTHE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.172201e-137bud| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134712.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A397ZZP90.0A0A397ZZP9_BRACM; Uncharacterized protein
STRINGBra001066.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]