PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134261.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 355aa    MW: 40765.5 Da    PI: 9.2329
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012113136123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg++F  ++ L  H r  H
  XP_009134261.1 113 YFCGVCGRRFYANEKLIAHFRQiH 136
                     78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.4E-730113IPR029060PIN domain-like
PfamPF019361.2E-735266IPR021139NYN domain, limkain-b1-type
PROSITE profilePS5015711.718113141IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
CDDcd061672.84E-10179265No hitNo description
Gene3DG3DSA:3.40.50.10104.4E-7198268IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFSRFLHRIR SSKPQITSLN STKPFTSLNP KPRTRVAVFW DLDNKPPASH PPHDAAVKLR  60
TAASSFGSVK LMVAYANRHA FSYVPLQVRE ERKYRKLLNQ LEKTGLSKPA ERYFCGVCGR  120
RFYANEKLIA HFRQIHETEN QKRVRQIESA KGHQRVRLVA KYSMKMEKYK RAARNVLTPK  180
EGYGLAEELT RGGFWVKMVS DKPEAADRAL KEHMVDVMDR REAECLVLVS DDSGFAEVLW  240
EAKERCLRTV VIGDLSEGKL KRVADVAYSW KEVVMGKAKK EVEKVVGKWR DRDVLKTLEW  300
CYDPVLEKER GYACGDWDYG FDSDDEVESG AEMGDGGDWW EMDDEDGAGS SRPCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134261.10.0PREDICTED: uncharacterized protein LOC103858624
TrEMBLM4C9890.0M4C989_BRARP; Uncharacterized protein
STRINGBra000767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein