PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134156.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 189aa    MW: 21431.4 Da    PI: 8.2497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-111663555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + +E++RR ++++ ++eL +llP+    + + l   + L +A +YIk+Lq
  XP_009134156.1 16 RKTIEKNRRIQMKDLYSELNSLLPQT---SRESLALPDQLDEAANYIKKLQ 63
                    5789*********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.39E-5967No hitNo description
PROSITE profilePS5088811.2171162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-81676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-101678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-41768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDQSHLNASQ SRSVDRKTIE KNRRIQMKDL YSELNSLLPQ TSRESLALPD QLDEAANYIK  60
KLQVNVEKKR ERKRKLLATA AFEKLNSTGS SSMSSSVDVS MPRRLPRIEI QETGPVLHIF  120
LVTSMEHKFI FHEITRLITE EAGAEMTHAG YSIVDDAVFH TLHCKVEDCD YGAGTRISES  180
LKKLVNTVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKRERKRKL
26875KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134156.11e-139PREDICTED: transcription factor bHLH36-like
RefseqXP_013669289.11e-139transcription factor bHLH162-like
SwissprotF4JIJ73e-91BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A398ASR31e-138A0A398ASR3_BRACM; Uncharacterized protein
TrEMBLM4DAH61e-138M4DAH6_BRARP; Uncharacterized protein
STRINGBra013486.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-85bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]