PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009133950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 416aa MW: 46215.9 Da PI: 5.6391 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.9 | 2.9e-21 | 72 | 163 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++l+++ l+lp +f+ ++g k + ++++l+de+ rsW + l+++k+s+++ +t+GW++F+++ng keg + Fkl++ ++++++++v+ + XP_009133950.1 72 VTASNLEEDSLCLPPDFTISNGFKR-KCRKIVLTDERERSWALDLRFNKSSDTFCITRGWRNFCEENGRKEGSLFKFKLMR-NGETPLLSVCPT 163 5788999999***********8775.567**************************************************98.677799999865 PP | |||||||
2 | B3 | 54.6 | 2e-17 | 192 | 286 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+lks+rl+lp +f++e+g++k++ ++tl ++g ++ +l r +sgr+ l+kG k+F++angL+ g++++++l++ +++++v++ XP_009133950.1 192 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRMLANL-LRENSGRMSLGKGLKGFARANGLNMGESFTLELIW-ENATPVLS 282 7788899********************99766..8***************.799999*****************************.88889998 PP EE-S CS B3 96 vfrk 99 ++++ XP_009133950.1 283 LLST 286 8765 PP | |||||||
3 | B3 | 61.9 | 1.1e-19 | 294 | 388 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ +++ d++k++rl lp +f++e+g+++++ t+ l ++g +W +l r ++gr+ l+kGWk+F++ ngL+ g++++++ ++ ++++++++ XP_009133950.1 294 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARGNGLEIGESFTLESIW-EDATPMLS 384 7778899********************99665..8***************.6888888*************************999.88889988 PP EE-S CS B3 96 vfrk 99 + ++ XP_009133950.1 385 LSSR 388 8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-21 | 60 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-20 | 62 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.958 | 67 | 164 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.29E-20 | 67 | 162 | No hit | No description |
SMART | SM01019 | 2.1E-25 | 68 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-19 | 72 | 162 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 183 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-17 | 188 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.29E-16 | 191 | 285 | No hit | No description |
PROSITE profile | PS50863 | 11.434 | 192 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-16 | 192 | 285 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-25 | 192 | 287 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-20 | 287 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-21 | 290 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.58E-18 | 293 | 385 | No hit | No description |
PROSITE profile | PS50863 | 15.143 | 294 | 389 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-19 | 294 | 388 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-28 | 294 | 389 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MLSGSGSTSC DTHTNNEDQA NMGYISRKKH PITTEEVDDG QDNTGNKKVK KNNSQAEADS 60 SSSDNSCFVA PVTASNLEED SLCLPPDFTI SNGFKRKCRK IVLTDERERS WALDLRFNKS 120 SDTFCITRGW RNFCEENGRK EGSLFKFKLM RNGETPLLSV CPTESISDGT QGGDENIPQI 180 CRDSTLPNPN RFVTLTLTND SLKSSRLYLP LPFLKENGMD KPGMVTLLGK DGTRMLANLL 240 RENSGRMSLG KGLKGFARAN GLNMGESFTL ELIWENATPV LSLLSTEFRS QNRFVTLTLT 300 QDSFKNSRLG LPLPFMRENG MNEPGTIALL GKDGTKWMTN LLRESQGRMS LGKGWKDFAR 360 GNGLEIGESF TLESIWEDAT PMLSLSSRES KRETVHVSAE PTIGNETKKD ENNIEE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.8830 | 0.0 | bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009133950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133949.1 | 0.0 | PREDICTED: B3 domain-containing protein REM12-like | ||||
Refseq | XP_009133950.1 | 0.0 | PREDICTED: B3 domain-containing protein REM12-like | ||||
Swissprot | P0CAP4 | 1e-121 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A397ZY10 | 0.0 | A0A397ZY10_BRACM; Uncharacterized protein | ||||
STRING | Bra000545.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-123 | B3 family protein |