PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133949.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 416aa    MW: 46215.9 Da    PI: 5.6391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.92.9e-2172163699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++++l+++ l+lp +f+ ++g k  + ++++l+de+ rsW + l+++k+s+++ +t+GW++F+++ng keg  + Fkl++ ++++++++v+ +
  XP_009133949.1  72 VTASNLEEDSLCLPPDFTISNGFKR-KCRKIVLTDERERSWALDLRFNKSSDTFCITRGWRNFCEENGRKEGSLFKFKLMR-NGETPLLSVCPT 163
                     5788999999***********8775.567**************************************************98.677799999865 PP
2B354.62e-17192286199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl  ++g ++  +l  r +sgr+ l+kG k+F++angL+ g++++++l++ +++++v++
  XP_009133949.1 192 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRMLANL-LRENSGRMSLGKGLKGFARANGLNMGESFTLELIW-ENATPVLS 282
                     7788899********************99766..8***************.799999*****************************.88889998 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++++
  XP_009133949.1 283 LLST 286
                     8765 PP
3B361.91.1e-19294388199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++ ngL+ g++++++ ++ ++++++++
  XP_009133949.1 294 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARGNGLEIGESFTLESIW-EDATPMLS 384
                     7778899********************99665..8***************.6888888*************************999.88889988 PP

                     EE-S CS
              B3  96 vfrk 99 
                     + ++
  XP_009133949.1 385 LSSR 388
                     8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-2160163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2062163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.95867164IPR003340B3 DNA binding domain
CDDcd100177.29E-2067162No hitNo description
SMARTSM010192.1E-2568164IPR003340B3 DNA binding domain
PfamPF023625.9E-1972162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-17183282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-17188284IPR015300DNA-binding pseudobarrel domain
CDDcd100179.29E-16191285No hitNo description
PROSITE profilePS5086311.434192287IPR003340B3 DNA binding domain
PfamPF023621.1E-16192285IPR003340B3 DNA binding domain
SMARTSM010195.9E-25192287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-20287391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21290391IPR015300DNA-binding pseudobarrel domain
CDDcd100179.58E-18293385No hitNo description
PROSITE profilePS5086315.143294389IPR003340B3 DNA binding domain
PfamPF023623.5E-19294388IPR003340B3 DNA binding domain
SMARTSM010195.5E-28294389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLSGSGSTSC DTHTNNEDQA NMGYISRKKH PITTEEVDDG QDNTGNKKVK KNNSQAEADS  60
SSSDNSCFVA PVTASNLEED SLCLPPDFTI SNGFKRKCRK IVLTDERERS WALDLRFNKS  120
SDTFCITRGW RNFCEENGRK EGSLFKFKLM RNGETPLLSV CPTESISDGT QGGDENIPQI  180
CRDSTLPNPN RFVTLTLTND SLKSSRLYLP LPFLKENGMD KPGMVTLLGK DGTRMLANLL  240
RENSGRMSLG KGLKGFARAN GLNMGESFTL ELIWENATPV LSLLSTEFRS QNRFVTLTLT  300
QDSFKNSRLG LPLPFMRENG MNEPGTIALL GKDGTKWMTN LLRESQGRMS LGKGWKDFAR  360
GNGLEIGESF TLESIWEDAT PMLSLSSRES KRETVHVSAE PTIGNETKKD ENNIEE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.88300.0bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133949.10.0PREDICTED: B3 domain-containing protein REM12-like
RefseqXP_009133950.10.0PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP41e-121REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A397ZY100.0A0A397ZY10_BRACM; Uncharacterized protein
STRINGBra000545.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-123B3 family protein