PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133911.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 812aa MW: 91914.9 Da PI: 6.6614

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.6	6.4e-11	37	116	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 +fY+eYA+++ F+ + + ++ + +r+fvCs++ kr++++ + C+a+l+++++ ++kw+vtk+++eH+H la XP_009133911.1 37 SFYDEYARQLSFTSKPLTVTTD---SSSSSREFVCSNSSKRSRRRPA------------ETCDAMLRIELKGgvddnNNKWVVTKFVKEHSHGLA 116 5*********9988876665...5567***99999887665............78****9866666799***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-6	38	116	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-21	218	309	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	493	529	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-9	499	527	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-8	504	531	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MDDIHLDMDN PLGVQDEIGV AEPCVGMEFD SEKEAKSFYD EYARQLSFTS KPLTVTTDSS 60 SSSREFVCSN SSKRSRRRPA ETCDAMLRIE LKGGVDDNNN KWVVTKFVKE HSHGLATPTT 120 LHCLRPRRHF ASSDKSNVPS GMMYVSMDGS RARVALKESK RTLGRDAHNL LEYFKRMQAE 180 NPGFFYAVQL DDDSNQMTNV FWADSRSRIA YARFGDTVTL DTRYRWSQFL VPFAPFTGVN 240 HHGQSVLFGC ALILDDSEAS FIWLFKTFLT AMRDHSPLSL VTDQDRAIQV AAAQVFPGAR 300 HCINKWDVLR EGQEKLSHVC LAYPSFQVEL YNSINFTETV EEFESSWSSI IEKYDLGRHE 360 WLSSIYNARA QWVPVYFRDS FFAAVFPTQG SFFDGYVNQQ TTLPMFFRLY ERAMESWFEM 420 EIEADLDTVN TPPILKTPSP MESQAANLYT RRIFEKFQAE LVETFAHTAN RIDDDGTTAT 480 FRVAKFENDN KAYMVSFCYP EMRANCSCQM FEHSGILCRH VLTVFTVTNI LTLPPHYILG 540 RWTRNAKSLV EMDEHVGDGL LHRYNHLCRE AIKYAEEGAA TPETYNIAFG ALREGGKKVS 600 AVRKSVGRGA PPSSHGGDAK TSLSASDSTP LLWPRQDEMS RRFNLNDGGA RAQSVADLNL 660 PRMAPVSLHR DDGAPENMVA LPCLKSMTWA MESKNTMPGG RVAVINLKLH DYRKKFPSAD 720 MEVKFQLSSV TLEPMLRSMA YISEQLSAPA NRVAVINLKL QDTETTTGES EVKFQVSRDT 780 LGAMLRSMAY IREQLSIVGD QQTEPQGKKQ RK

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MDDIHLDMDN PLGVQDEIGV AEPCVGMEFD SEKEAKSFYD EYARQLSFTS KPLTVTTDSS  60
SSSREFVCSN SSKRSRRRPA ETCDAMLRIE LKGGVDDNNN KWVVTKFVKE HSHGLATPTT  120
LHCLRPRRHF ASSDKSNVPS GMMYVSMDGS RARVALKESK RTLGRDAHNL LEYFKRMQAE  180
NPGFFYAVQL DDDSNQMTNV FWADSRSRIA YARFGDTVTL DTRYRWSQFL VPFAPFTGVN  240
HHGQSVLFGC ALILDDSEAS FIWLFKTFLT AMRDHSPLSL VTDQDRAIQV AAAQVFPGAR  300
HCINKWDVLR EGQEKLSHVC LAYPSFQVEL YNSINFTETV EEFESSWSSI IEKYDLGRHE  360
WLSSIYNARA QWVPVYFRDS FFAAVFPTQG SFFDGYVNQQ TTLPMFFRLY ERAMESWFEM  420
EIEADLDTVN TPPILKTPSP MESQAANLYT RRIFEKFQAE LVETFAHTAN RIDDDGTTAT  480
FRVAKFENDN KAYMVSFCYP EMRANCSCQM FEHSGILCRH VLTVFTVTNI LTLPPHYILG  540
RWTRNAKSLV EMDEHVGDGL LHRYNHLCRE AIKYAEEGAA TPETYNIAFG ALREGGKKVS  600
AVRKSVGRGA PPSSHGGDAK TSLSASDSTP LLWPRQDEMS RRFNLNDGGA RAQSVADLNL  660
PRMAPVSLHR DDGAPENMVA LPCLKSMTWA MESKNTMPGG RVAVINLKLH DYRKKFPSAD  720
MEVKFQLSSV TLEPMLRSMA YISEQLSAPA NRVAVINLKL QDTETTTGES EVKFQVSRDT  780
LGAMLRSMAY IREQLSIVGD QQTEPQGKKQ RK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133911.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189333	0.0	AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133911.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A397ZXV4	0.0	A0A397ZXV4_BRACM; Uncharacterized protein
STRING	Bo3g041650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]