PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133741.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 311aa    MW: 33174.9 Da    PI: 10.2854
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.5e-37611592101
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  +   ++++a  +++
  XP_009133741.1  61 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTT--TNADADVAEN 153
                     57999***********************************************************8888854421222222222..2222222222 PP

             TCP  96 kskksq 101
                     + kk++
  XP_009133741.1 154 PAKKRR 159
                     111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3066146IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32767121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MATIKKHEAE RLRAVDLNII ETSKPFEVAN TVSLELKAEP SLEVPSISMS LAPPSSSIGP  60
PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LENAEPAIIA  120
ATGTGTVPAI AMSVNGTLKI PTTTNADADV AENPAKKRRK RPSNSEYIDI NEPVSVSVSS  180
GLAPASTAAQ QTLPQGMIPM WAFPSNAVVP TVGAFFLVQN PSNQPQILAY PAAAAALPAT  240
YVAAVQQASS MARPPPTPQV VPNFTGSVMA PSSSSSIATK NMLRDFSLES YNKKELHQFM  300
TTTAAPRSSN H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895800.0AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133741.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646471e-137TCP9_ARATH; Transcription factor TCP9
TrEMBLM4C8670.0M4C867_BRARP; Uncharacterized protein
STRINGBra000395.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-128TCP family protein