PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133518.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 586aa    MW: 64407.1 Da    PI: 6.2335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07234254526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f r G C++Gd C +aHg
  XP_009133518.1 234 PCPDFKR-GDCRRGDMCEYAHG 254
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.33E-157150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-1410148IPR020683Ankyrin repeat-containing domain
CDDcd002041.68E-1213130No hitNo description
PROSITE profilePS5029716.54759165IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-959124IPR020683Ankyrin repeat-containing domain
SMARTSM002480.485987IPR002110Ankyrin repeat
PROSITE profilePS5008812.20992127IPR002110Ankyrin repeat
SMARTSM002480.01192124IPR002110Ankyrin repeat
SMARTSM003561.3E-5229255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4234256IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-5234254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432234256IPR000571Zinc finger, CCCH-type
SMARTSM0035668264287IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.878264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MMNHLRVETE DTFSSLLELA ANNDVEGVRL SIDRDPSCVD EPGLWYGRQK GSKSIMVNDL  60
RTPLMVAATY GSLDVIKAIL PLTNVNRACG NDQTTALHCA ASGGAVNAVQ VVKLLLAAGA  120
DLDALDGDGQ RAGDVIVVPP KLEGVKVMLQ ELLLSSSASH SSPTEFKKEY PVLDPSLPDI  180
KNCIYATDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFKR  240
GDCRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTGCARRV CFFAHTPDEL RPLYSSTGSA  300
VHSPRSGAEF AAGLSPMSPL SPSSSAMSWP HPSVPALHLP GSNLQSSRLR ASLNARDVLS  360
DYEQEQLLNE FSNSLSWSGR MKTLPHSNLE DLFSPEGGSS SPRFTDSAVF SPTHKSAVFN  420
QFHQQQQSML SSPKSVDHSL FSGGGRMSPR NVVEPISPMS SRVSMLAQQQ QHRFRSLSSR  480
ELRSNTSPVV GSPVNNSSWW GSSNGEPDWG MSSEEALGNL RSSSSLFDGD DEPDVSWVQS  540
LVKESTPNEG KENSKKPTTV EVVTDNAGLE AWIEQMQLDQ LIPQHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133516.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_009133517.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_009133518.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_009133520.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A397ZWX70.0A0A397ZWX7_BRACM; Uncharacterized protein
STRINGBo3g035820.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]