PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133142.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 421aa    MW: 46140.2 Da    PI: 9.854
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30156212360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers   + v ei+Y+geHnh+k
  XP_009133142.1 156 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGLVSEIVYQGEHNHSK 212
                     9***************************************.9**************85 PP
2WRKY102.91.8e-32341398259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
  XP_009133142.1 341 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 398
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26151213IPR003657WRKY domain
SMARTSM007743.4E-32154212IPR003657WRKY domain
SuperFamilySSF1182907.85E-24155213IPR003657WRKY domain
PROSITE profilePS5081122.481156213IPR003657WRKY domain
PfamPF031065.8E-24156210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-32328398IPR003657WRKY domain
PROSITE profilePS5081131.697335400IPR003657WRKY domain
SuperFamilySSF1182902.88E-27335398IPR003657WRKY domain
SMARTSM007742.4E-38340399IPR003657WRKY domain
PfamPF031065.1E-26341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEVKESKRVV IAKPVASRPS FTSIRTFANL LTDSVTVSPP HETVDAAIRP KTLRFKQPAA  60
AAASVSCPQV EGNDKGKSCD DSDTKSYVVY KPKAKLVSQA TVSALANMGN HQQVWRQSEA  120
VPYGKSVSQG TRPNLVPRVP SFKESETSAG DRSSVDGYNW RKYGQKQVKG SDCPRSYYKC  180
THPKCPVKKK VERSMGGLVS EIVYQGEHNH SKPSCPLPRR ASSSSSSGFQ RPQRELASEG  240
SIGQDSSNVC FHPLWSNQSN DSSKSIAEKM NEGCVITPFE FAVPRSANST GGTSDSGCRS  300
SSQCDEGELD DPSRSKRSRK NEKQASQTGV SQSSVESDSL EDGFRWRKYG QKVVGGNAHP  360
RSYYRCTSAN CRARKHVERA SDDPRAFITT YEGKHNHHLN LRPPTSPTLP FTSSQHSNQA  420
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28156399978Probable WRKY transcription factor 4
2lex_A4e-28156399978Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133142.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121680.0FJ012168.1 Brassica napus WRKY44 transcription factor (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133142.10.0PREDICTED: WRKY transcription factor 44 isoform X3
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A3P5ZYZ60.0A0A3P5ZYZ6_BRACM; Uncharacterized protein
TrEMBLM4E2W10.0M4E2W1_BRARP; Uncharacterized protein
STRINGBra023112.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]