PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009133079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 169aa MW: 19817.1 Da PI: 10.5509 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 59.3 | 1.1e-18 | 9 | 102 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHH.HHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeefa.kkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkell 94 F + +y++++d++l+++iswse+++sfv++d++e+ kk+L ++F ++++ F++ L+ gF ++k ++++ eF h++ F +gk el+ XP_009133079.1 9 FYTGIYKVVDDPSLDSIISWSESNKSFVIWDPKELVeKKILRRFF-RNKLSHFIKDLKSHGFVRIKGSDEH-------LEFGHEQyFVRGKPELM 95 88899**************************99986155666666.5789*******************98.......******989******** PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 k++rk XP_009133079.1 96 IKLRRKV 102 ***9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.2E-25 | 5 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.62E-19 | 5 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-20 | 7 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-17 | 9 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-5 | 9 | 32 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-5 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MAWMSLSQFY TGIYKVVDDP SLDSIISWSE SNKSFVIWDP KELVEKKILR RFFRNKLSHF 60 IKDLKSHGFV RIKGSDEHLE FGHEQYFVRG KPELMIKLRR KVAWGRVKKD LKAAKARAKA 120 EAEKKGCVGD QPSYRKMCLE DARIRFDQIM GHSTKAKTPL ENSFRHLQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009133079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133079.1 | 1e-123 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A3P5Z3I7 | 1e-105 | A0A3P5Z3I7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DA99 | 1e-105 | M4DA99_BRARP; Uncharacterized protein | ||||
STRING | Bra013409.1-P | 1e-106 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 8e-25 | HSF family protein |