PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133068.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 165aa    MW: 19443.6 Da    PI: 10.5019
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind62.21.3e-194962100
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkell 94 
                     F   +yei++d++l+++isws++++sf++++++e f+kk+L+++F   n++ F+  L++YgF +++ ++++        eF hk+ F +gk ell
  XP_009133068.1   4 FHVAIYEIVDDPSLDSTISWSKSNKSFIIWNPKElFTKKILKRFFC-CNLSQFITELDTYGFVRIEGSDEQ-------LEFGHKQyFVRGKPELL 90 
                     77789*************************9655389999999885.799*******************99.......******989******** PP

                     XXXXXX CS
    HSF_DNA-bind  95 ekikrk 100
                     +k++ +
  XP_009133068.1  91 KKMRLQ 96 
                     *98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-22196IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.38E-20294IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-20391IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-5427IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-18494IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-55567IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MLQFHVAIYE IVDDPSLDST ISWSKSNKSF IIWNPKELFT KKILKRFFCC NLSQFITELD  60
TYGFVRIEGS DEQLEFGHKQ YFVRGKPELL KKMRLQAAMN RMKKSAKKAK ARAEAEKNGS  120
MTVRREPRII IDADEVRMRY KQIFESSSST IAKTPLENRF RHLRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.38730.0bud| flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133068.11e-121PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A0D3A4F01e-110A0A0D3A4F0_BRAOL; Uncharacterized protein
STRINGBo1g021700.11e-110(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-24HSF family protein