PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133062.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 166aa    MW: 19516.9 Da    PI: 10.6183
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind58.91.4e-189976100
                     HHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXX CS
    HSF_DNA-bind   6 lyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekik 98 
                     l+ei++d++l+++isws++++sf++++++e f+kk+L+++F   n++ F+  L++YgF +++ ++++        eF hk+ F +gk ell+k++
  XP_009133062.1   9 LHEIVDDPSLDSTISWSKSNKSFIIWNPKElFTKKILKRFFC-CNLSQFITELDTYGFVRIEGSDEQ-------LEFGHKQyFVRGKPELLKKMR 95 
                     789***********************9655389999999885.799*******************99.......******989*********987 PP

                     XX CS
    HSF_DNA-bind  99 rk 100
                      +
  XP_009133062.1  96 LQ 97 
                     55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000566.4E-5528IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.5E-20892IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-19995IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-20997IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-18995IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-55668IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTKLLLLLLH EIVDDPSLDS TISWSKSNKS FIIWNPKELF TKKILKRFFC CNLSQFITEL  60
DTYGFVRIEG SDEQLEFGHK QYFVRGKPEL LKKMRLQAAM NRMKKSAKKA KARAEAEKNG  120
SMTVRREPRI IIDADEVRMR YKQIFESSSS TIAKTPLENR FRHLRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.38730.0bud| flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133068.11e-114PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A0D3A4F01e-104A0A0D3A4F0_BRAOL; Uncharacterized protein
STRINGBo1g021700.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.15e-21HSF family protein