PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009132988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 165aa MW: 19395.5 Da PI: 10.7905 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 60.3 | 4.9e-19 | 4 | 95 | 2 | 100 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH.HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeee.fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkell 94 F +yei++d++l+++isws+n++sfv+++++e f+kk+L+++F n++ F+ L++YgF ++k +e+ eF hk+ F +gk ell XP_009132988.1 4 FQVAIYEIVDDPSLDSTISWSKNNKSFVIWNPNElFTKKILKRFFC-CNLSQFLTELDTYGFVRIKGSEH--------LEFGHKQyFVRGKPELL 89 67789**************************765389999999885.799****************9996........6*****989******** PP XXXXXX CS HSF_DNA-bind 95 ekikrk 100 +k++ + XP_009132988.1 90 KKMRLQ 95 *98755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.8E-23 | 1 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.6E-20 | 2 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-20 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-5 | 4 | 27 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-18 | 4 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-5 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKQFQVAIYE IVDDPSLDST ISWSKNNKSF VIWNPNELFT KKILKRFFCC NLSQFLTELD 60 TYGFVRIKGS EHLEFGHKQY FVRGKPELLK KMRLQAAMNR MKKSAQRAKA RAEAEKNGSV 120 TVRREPRIII NADEARMRYK QIFESSSSST IAKTPLENRF RHLRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.3873 | 0.0 | bud| flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009132988.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132988.1 | 1e-121 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | M4DA96 | 1e-120 | M4DA96_BRARP; Uncharacterized protein | ||||
STRING | Bra013406.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 3e-24 | HSF family protein |