PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009132897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 463aa MW: 51130 Da PI: 5.4431 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 3.1e-11 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff+rtG+C yG++C+++H+ XP_009132897.1 43 PGERDCQFFLRTGQCGYGNSCRYNHP 68 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.4 | 8.9e-12 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tG CkyG++Ck++H++ XP_009132897.1 89 QPDCEYYLKTGACKYGSTCKYHHPK 113 789********************96 PP | |||||||
3 | zf-CCCH | 32.5 | 1.4e-10 | 134 | 157 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG C++G CkF+H+ XP_009132897.1 134 EKSCPYYMQTGMCRFGVACKFHHP 157 667********************8 PP | |||||||
4 | zf-CCCH | 39.9 | 6.9e-13 | 233 | 257 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Crff+ tGtCkyGd Ck++H++ XP_009132897.1 233 RAECRFFMNTGTCKYGDDCKYSHPK 257 799********************96 PP | |||||||
5 | zf-CCCH | 30.5 | 6.2e-10 | 278 | 303 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f ++G+CkyG++Ck+ H+ XP_009132897.1 278 PGQPACGNFKAYGFCKYGPNCKYDHP 303 57899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-9 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 48 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 92 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 130 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-5 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.798 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 136 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.671 | 230 | 258 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-8 | 231 | 257 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 233 | 257 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-7 | 233 | 258 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-6 | 236 | 257 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 276 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 277 | 304 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 277 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-7 | 279 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MSETQNSTET VRSSDKTEDT LTRMKVNEEN MEQSSPSPYP DRPGERDCQF FLRTGQCGYG 60 NSCRYNHPLS LVPQAVSYHR DELPERIGQP DCEYYLKTGA CKYGSTCKYH HPKDRNGAEP 120 VLFNVLGYPM RQGEKSCPYY MQTGMCRFGV ACKFHHPHPQ NGHSTTTYGM SSFPYTMMSL 180 PPATYGVMPP PQVPYPQAYI PFMFAPPQGW SPYMAGSNPI YNVKTQPDSS SERAECRFFM 240 NTGTCKYGDD CKYSHPKERM LESPPNLSHH IVLLPARPGQ PACGNFKAYG FCKYGPNCKY 300 DHPSSPVSTQ PRSSTPPSRS DSTAISNGDK PGAENNSSEI EKQDEDISDK SEVQESSQLS 360 GSDSTAISNG VKPAADNHSS EVEKHDDSSD KTESQLSGCE STVISNGNKP AAESHSSEIE 420 KQDEDISDKD CDSTALSNGK TDAESSSSEI KKQEDNNASQ RVN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009132897.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132897.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 26-like | ||||
Swissprot | O48772 | 0.0 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | A0A397ZWR3 | 0.0 | A0A397ZWR3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E2B9 | 0.0 | M4E2B9_BRARP; Uncharacterized protein | ||||
STRING | Bra022919.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 1e-178 | zinc finger nuclease 2 |