PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132720.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 378aa    MW: 42564.1 Da    PI: 6.79
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-29154211260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++v+ei+Y+g+H+h+k
  XP_009132720.1 154 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCFSKKIVETAS-DGQVTEIIYKGDHKHPK 211
                     8***************************************9.***************85 PP
2WRKY101.16.3e-32313370259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+vkg+++pr+YY+Ct++gC v+k++ersaed+++v +tYeg+Hnh+
  XP_009132720.1 313 VDGFRWRKYGQKVVKGNTNPRNYYKCTFQGCGVRKQIERSAEDERAVLTTYEGRHNHD 370
                     5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-24141212IPR003657WRKY domain
SuperFamilySSF1182901.44E-22150212IPR003657WRKY domain
SMARTSM007741.1E-29153211IPR003657WRKY domain
PROSITE profilePS5081120.151154212IPR003657WRKY domain
PfamPF031063.8E-22154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-33297372IPR003657WRKY domain
SuperFamilySSF1182901.27E-27304372IPR003657WRKY domain
PROSITE profilePS5081133.671307372IPR003657WRKY domain
SMARTSM007747.9E-36312371IPR003657WRKY domain
PfamPF031062.1E-24314370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSASFTDLL ASSGVDCYEE DEDFLCGFSP ERTGSGLPKF KTAQPPPLPI SQSFAFSDLL  60
DSPLLLSSSH SLISPTTGAF PYQGFNGTNN HSDIPWQLQP QTQPSNASSA LQETYAVQDL  120
HKKKDPVPRE FAAHSLGSDR QVKVPSYMVS RNSNDGYGWR KYGQKQVKKS ENPRSYFKCT  180
YPNCFSKKIV ETASDGQVTE IIYKGDHKHP KPEFTKRPSG STSANARRMF NPSSVVSETH  240
DQSENSSISF DYSDLEQKSF KSEYGEIDEE EEQPEMKRLK REGEDEGMSI EVSRGVKEPK  300
VVVQTISDID VLVDGFRWRK YGQKVVKGNT NPRNYYKCTF QGCGVRKQIE RSAEDERAVL  360
TTYEGRHNHD IPTTLRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-32303372877Probable WRKY transcription factor 4
2lex_A7e-32303372877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.31748e-93leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00282DAPTransfer from AT2G30250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931660.0KM593166.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132720.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLM4E1Y60.0M4E1Y6_BRARP; Uncharacterized protein
STRINGBra022786.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]