PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132571.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 438aa    MW: 47587.8 Da    PI: 7.8753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06113134426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Crf+   G C++G++C+F H+
  XP_009132571.1 113 KVCRFWVD-GSCSHGEKCRFLHC 134
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3242854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0182853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6110133IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4111135IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5113129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.4E-16130242IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-6140179IPR001680WD40 repeat
SuperFamilySSF509785.86E-47141431IPR017986WD40-repeat-containing domain
PfamPF004001.6E-5143179IPR001680WD40 repeat
PROSITE profilePS5008214.418147188IPR001680WD40 repeat
PROSITE profilePS5029420.962147396IPR017986WD40-repeat-containing domain
PRINTSPR003207.1E-7166180IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
SMARTSM003205.9219256IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.107.0E-31243430IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.054263300IPR001680WD40 repeat
PROSITE profilePS5008211.344270309IPR001680WD40 repeat
PRINTSPR003207.1E-7287301IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4303340IPR001680WD40 repeat
PfamPF004000.0046305339IPR001680WD40 repeat
PRINTSPR003207.1E-7327341IPR020472G-protein beta WD-40 repeat
SMARTSM003205.8344387IPR001680WD40 repeat
SMARTSM003203.4390427IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDFDSNGGNK RVFNRLGGPT RPSPQQTNTR QQVCFHWRAG RCYRNPCQFL HRELPAGPVP  60
NHANKRAPDE SGFAGPSHRR GPGFNGSHSS NNNNNTWGRF GGNSRAVVTK TEKVCRFWVD  120
GSCSHGEKCR FLHCWSKGDG FSLLTQLDGH EKLVSGIALP SGSDKLYTGS KDGTIRVWDC  180
ASGQCTSVLN LGAEVGCVIT EGPWLLVGMP NLVKAWNMET NADQSLSGPV GQVYSLVVGT  240
DLLFAGTQDG SILAWRYNAA TNCFEPAASL MGHTLAVVTL YVGANRLYSG SMDKSIKVWS  300
LENLQCIQTL TDHTSVVMSL ICWDQFLLSC SLDNTVKIWA AVEGGNLEVT YTHKEENGVL  360
ALCGVHDAEA KPVLLCSCND NTLRLYDLPS FTERGKIFAK QEIRSIQIGP GGIFFTGDGT  420
GQVKVWKWST APAAAAMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-201264375323Tako8
6g6n_A2e-201264375323Tako8
6g6n_B2e-201264375323Tako8
6g6n_C2e-201264375323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.254920.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132571.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLM4EK320.0M4EK32_BRARP; Uncharacterized protein
STRINGBra029149.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein