PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009132288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 388aa MW: 44242.1 Da PI: 4.8439 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.7 | 2.1e-34 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+ weF+++ F +g+ +l+++ XP_009132288.1 16 FLTKTYEMVDDSSSDSIVSWSQSNRSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKN 101 9**************************************************************99988.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_009132288.1 102 IHRRKP 107 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.49E-35 | 11 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.4E-62 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.2E-37 | 13 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.9E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.2E-31 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNR SFIVWNPPEF SRDLLPRFFK 60 HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSLPNLQAQQ 120 NALTDSERQR MSSQIERLTK EKEGLLQKLH RQEQERDVFE QQVKKLKDQL QHMEKRQKTM 180 DSYVSQVMET PELALNLSPC LPETNERKRR LPRMLEDNQA CVVVREEGST SASDETEHQV 240 EELESSIAVW ENLVSVSDDS CEGMAQSTGS MMILDVDDSS TCPESPPLSC IHLSIDTCPK 300 SPPSHKIIDI NSDVSKEQNI VAPAPPPPAT GVNDVFWQQL LTENPGSAEQ REVQPEKKED 360 KGEDPSEKCW WNSRNVNAIT EQLGHLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-23 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-23 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-23 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | ERKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009132288.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132283.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A398ARZ9 | 0.0 | A0A398ARZ9_BRACM; Uncharacterized protein | ||||
STRING | Bra013358.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 0.0 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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