PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 159aa MW: 17017.9 Da PI: 10.4065 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H XP_009131969.1 80 HPCPICGVEFPMGQALGGHMRRH 102 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-6 | 34 | 102 | No hit | No description |
Pfam | PF13912 | 2.2E-11 | 35 | 60 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.6 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.265 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-11 | 80 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009643 | Biological Process | photosynthetic acclimation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVAISEINPT VEAKAANCLM LLSRVGQKGG DQKRVFTCKT CLKEFHSFQA LGGHRASHKK 60 PNNNESLSGL VKKAKAPSSH PCPICGVEFP MGQALGGHMR RHRNEIGGGA ALVTRALLPE 120 PTMTTLKKSS SGKRVACLDL SLGMVENLNL KLELGRTVC |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131969.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ166621 | 1e-122 | DQ166621.1 Brassica carinata C2H2 zinc finger protein 1 (ZF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131969.1 | 1e-113 | PREDICTED: zinc finger protein ZAT12-like | ||||
Refseq | XP_009131970.1 | 1e-113 | PREDICTED: zinc finger protein ZAT12-like | ||||
Refseq | XP_013680546.1 | 1e-113 | zinc finger protein ZAT12-like | ||||
Refseq | XP_013715806.1 | 1e-113 | zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 4e-93 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | M4CR50 | 1e-112 | M4CR50_BRARP; Uncharacterized protein | ||||
STRING | Bra006691.1-P | 1e-113 | (Brassica rapa) | ||||
STRING | Bra006692.1-P | 1e-113 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-95 | C2H2 family protein |