PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26373.5 Da PI: 5.1996 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.2 | 2.7e-39 | 6 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + GfrF Pt++elv +yL++++eg++ ++++vi+ +d+++veP++Lp +++++ ++w+fF++r++++a+g ++r+t sg Wkatg+ + XP_009131877.1 6 TTGFRFYPTEDELVEFYLRNQLEGRSgDSMHRVIPVLDVFEVEPSHLPDlageRCRGDAEQWFFFVPRQEREARGGGPSRTTGSGHWKATGSPGP 100 68***********************96667778**************9546666667888*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +sk+++ +g+kkt+vfy+grap+g kt+W m+ey+ XP_009131877.1 101 AFSKDNRMIGVKKTMVFYTGRAPTGGKTKWKMNEYK 136 ***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-44 | 4 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.551 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-22 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEEDLTTGFR FYPTEDELVE FYLRNQLEGR SGDSMHRVIP VLDVFEVEPS HLPDLAGERC 60 RGDAEQWFFF VPRQEREARG GGPSRTTGSG HWKATGSPGP AFSKDNRMIG VKKTMVFYTG 120 RAPTGGKTKW KMNEYKALDD RGNVSAIPKL RHEFSLCRVY VTSGSSRAFD RRPVGVRQTG 180 TMLTNDVAVA ETSFTVGTSP EISMSGGEHV DLSVDTEMVD GLTEPIWEWE QLNWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-28 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.9533 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131877.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131877.1 | 1e-175 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-141 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | M4CQY3 | 1e-173 | M4CQY3_BRARP; Uncharacterized protein | ||||
STRING | Bra006624.1-P | 1e-174 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-133 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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