PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009131587.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 357aa MW: 39950 Da PI: 8.3648

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.2e-17	41	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++v+a k++G Wk+I ++g ++t+ q++s+ qk+ XP_009131587.1 41 RERWTDEEHYKFVEALKLHGRA-WKRIQGHVG-TKTAVQIRSHAQKF 85 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.06E-16	36	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.082	36	90	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-14	39	88	IPR006447	Myb domain, plants
SMART	SM00717	3.7E-12	40	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-8	41	81	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-13	41	84	IPR001005	SANT/Myb domain
CDD	cd00167	4.54E-9	43	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSLLGAKASL RSRVEETSDT QMQFNDYAPK VRKPYIITKE RERWTDEEHY KFVEALKLHG 60 RAWKRIQGHV GTKTAVQIRS HAQKFFSKVA REATGCNGSS VEPIVIPPPR PKRRPMHPYP 120 RKLGNKGDHT ERDNSSPTSV LSSVGSEALG SLDSHSPNRS LSPVSFASPQ AALASTSNAP 180 EELETLKLEL FPRERLVNRE SSIKEPTKQS LKLFGKIVLV SDSDMSSSLT TYCKSPTQPL 240 PWKLSMVIDP QEEPLSCWIQ VPPKQEEVEN RCLDSEKAVQ NEGSSTGSNT GSVDDTGHTD 300 KSSEPEAMVS QWEFTPSERS VFSELTRVTS ESNSRGFCPY KKRKMITEAE QDIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSLLGAKASL RSRVEETSDT QMQFNDYAPK VRKPYIITKE RERWTDEEHY KFVEALKLHG  60
RAWKRIQGHV GTKTAVQIRS HAQKFFSKVA REATGCNGSS VEPIVIPPPR PKRRPMHPYP  120
RKLGNKGDHT ERDNSSPTSV LSSVGSEALG SLDSHSPNRS LSPVSFASPQ AALASTSNAP  180
EELETLKLEL FPRERLVNRE SSIKEPTKQS LKLFGKIVLV SDSDMSSSLT TYCKSPTQPL  240
PWKLSMVIDP QEEPLSCWIQ VPPKQEEVEN RCLDSEKAVQ NEGSSTGSNT GSVDDTGHTD  300
KSSEPEAMVS QWEFTPSERS VFSELTRVTS ESNSRGFCPY KKRKMITEAE QDIRLCL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18231	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131587.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353109	1e-103	AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131587.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X2
Swissprot	F4KGY6	0.0	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	M4CQA5	0.0	M4CQA5_BRARP; Uncharacterized protein
STRING	Bra006394.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-145	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]