PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21662.4 Da PI: 10.3277 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.6e-16 | 35 | 82 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + Vr ++ +gr++AeIrdp++ ++r++lg+f+t eeAa+a++ +++++g XP_009131504.1 35 RVVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTGEEAARAYDTTAREFHG 82 679*999.**********654...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.62E-25 | 32 | 89 | No hit | No description |
PROSITE profile | PS51032 | 20.6 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-26 | 33 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-26 | 35 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 37 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-9 | 37 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVSTDYSLLS THNSTTSFQE RWQLPRYGLP SSSQRVVRKR PWGRYAAEIR DPVKKTRVWL 60 GTFDTGEEAA RAYDTTAREF HGFKAKTNFS LPGESPTSDG SIGRSEMTTR RIEMVGRFPF 120 AWHRQNNVSS GLPPNVAGFF FDPSRAAALR VELSQVYPVQ FDPVNIELSI GIPETVKVHF 180 LVSKHLNWAQ I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 28 | 89 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131504.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232554 | 0.0 | AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131504.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor 9-like isoform X1 | ||||
Swissprot | Q9FE67 | 2e-63 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | M4CQ36 | 1e-128 | M4CQ36_BRARP; Uncharacterized protein | ||||
STRING | Bra006325.1-P | 1e-129 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 8e-66 | erf domain protein 9 |
Publications ? help Back to Top | |||
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