PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131472.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 308aa    MW: 34379.8 Da    PI: 7.64
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33165222259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  XP_009131472.1 165 EDGYRWRKYGQKAVKNSIYPRSYYRCTTQRCNVKKRVERSFQDPTVVITTYEGQHNHP 222
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381305.1E-971308IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.0E-34149224IPR003657WRKY domain
SuperFamilySSF1182903.27E-29156224IPR003657WRKY domain
PROSITE profilePS5081131.456159224IPR003657WRKY domain
SMARTSM007742.1E-38164223IPR003657WRKY domain
PfamPF031061.4E-25165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSNESKGLYS YQYLSSLSLY ELMNLPTSTP SSYGNNGFVP SSYSLADCFQ SSPGAAYDSL  60
LHKTLGVSPS SSEVFNSLVD QESKHDVTND VIGETPTRVS ASSSSSEADH PGEDSGKSQR  120
KRELVGYGGE ENRISKKVGK TKKEEKKQRE PRVSFMTKSE VDHLEDGYRW RKYGQKAVKN  180
SIYPRSYYRC TTQRCNVKKR VERSFQDPTV VITTYEGQHN HPLPTNLRGS SAAAAMYSAD  240
FMTPGSFTHD MFRSSAYTSG GSALDYGYEQ SSYGSVNANP NAHQEYRQGG EYELLKEIFP  300
SIFFKQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28155224877Probable WRKY transcription factor 4
2lex_A2e-28155224877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131472.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ21e-168WRK28_ARATH; WRKY transcription factor 28
TrEMBLM4D9X90.0M4D9X9_BRARP; WRKY transcription factor
STRINGBra013289.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-150WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]