PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009131323.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 254aa MW: 28931.6 Da PI: 9.8131

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1.1e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLk+kv +++l+ ++i++vd++k++Pw+Lp + eke yfFs+r+ ky++g+r+nrat+sgyWkatg dk+v+++ XP_009131323.1 14 LPPGFRFHPTDEELVVQYLKRKVFSSPLPS-SIIPDVDVCKADPWHLPGN---LEKERYFFSTREAKYPNGNRSNRATESGYWKATGIDKRVVTS 104 79************************99.89***********44...4789****************************999988 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfykg+ p+g++tdW+mheyrl XP_009131323.1 105 rGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138 57777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-59	10	166	IPR003441	NAC domain
PROSITE profile	PS51005	57.964	14	166	IPR003441	NAC domain
Pfam	PF02365	1.9E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDKTNLAKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSSP LPSSIIPDVD VCKADPWHLP 60 GNLEKERYFF STREAKYPNG NRSNRATESG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK 120 GKPPHGSRTD WIMHEYRLSS SPPIPFSLQS SIGPTQNWVL CRIFLKKRAG DKNEDEGDNR 180 NLRYNNDQLE TITTNQTEDK TKPIFFDFMR KERTTDLNLL PSSPSSGHAS SGVTTEIFSS 240 DEETSSCNSL RRNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-50	12	172	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-50	12	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-50	12	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-50	12	172	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-50	12	172	18	174	NAC domain-containing protein 19
3swm_B	4e-50	12	172	18	174	NAC domain-containing protein 19
3swm_C	4e-50	12	172	18	174	NAC domain-containing protein 19
3swm_D	4e-50	12	172	18	174	NAC domain-containing protein 19
3swp_A	4e-50	12	172	18	174	NAC domain-containing protein 19
3swp_B	4e-50	12	172	18	174	NAC domain-containing protein 19
3swp_C	4e-50	12	172	18	174	NAC domain-containing protein 19
3swp_D	4e-50	12	172	18	174	NAC domain-containing protein 19
4dul_A	4e-50	12	172	15	171	NAC domain-containing protein 19
4dul_B	4e-50	12	172	15	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.21489	1e-180	bud\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131323.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131323.1	0.0	PREDICTED: NAC domain-containing protein 83-like isoform X1
Swissprot	Q9FY93	1e-140	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	M4CPP7	1e-165	M4CPP7_BRARP; Uncharacterized protein
STRING	Bra006186.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-139	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]