PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131264.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 503aa    MW: 56133.4 Da    PI: 6.607
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94.2e-27277330256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  XP_009131264.1 277 KKVDWTQELHKKFVQAVDQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 330
                     689*****************.********************************96 PP
2Response_reg30.71.6e-113512815109
                     HHHHHHTTCEEEEEESSHHHHHHHH.HHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  15 rqalekegyeevaeaddgeealell.kekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     r+ le+ +y +v++++dg+eal  + k ++ +++ ++ ++ ++ +  e +k +++++++lp i+++     +++ +++ +Ga +fl Kp +p++l
  XP_009131264.1  35 RSKLESMDY-IVTTFTDGTEALSAViKSLEsFHIAIVEVNTSDEN--ESFKFLEAAKDHLPTIMISNDHCITTTMKCIALGAVEFLQKPLSPDKL 126
                     5668999**.************999544446*****999988865..778888888899*******9999************************9 PP

                     HH CS
    Response_reg 108 vk 109
                      +
  XP_009131264.1 127 KN 128
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.24E-1317135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.6E-1517141No hitNo description
PROSITE profilePS5011021.53420134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-734128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.08E-838133No hitNo description
PROSITE profilePS5129417.586273332IPR017930Myb domain
SuperFamilySSF466892.51E-18274333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25275332IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24277330IPR006447Myb domain, plants
PfamPF002495.2E-7279327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MVFTSNDISK WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFTD GTEALSAVIK  60
SLESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH CITTTMKCIA LGAVEFLQKP  120
LSPDKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPLTPQL  180
KQVSRLLDGG DRQENINSST EKENMEDQDI GESKSVDTTN HDDNVIVKEE KLDGETGDTK  240
SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ  300
AIPSRILELM KVDGLTRHNV ASHLQKFRMH RRNILPKEDH NHRYIQSREN HRQIQRQYNG  360
FQQQHRPVMA YPVWGLPGVH PPGAVPPLWP PPLQSSGQLP PWHWRPPYPT VNVNAWGCPI  420
VPPVTGPFSS PTVTGTFSTP PATQLDEEMV DQVVKEAISK PWLPLPLGLK PPSAESVLAE  480
LSRQGISAVP SSSSSINGSR RLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-17278329758ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.218720.0bud| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131253.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009131264.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLM4D9W70.0M4D9W7_BRARP; Uncharacterized protein
STRINGBra013277.1-P0.0(Brassica rapa)
STRINGBra013278.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]