PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130705.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 283aa    MW: 32345.8 Da    PI: 8.0259
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.91.7e-2349131371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_009130705.1  49 GGGLRQFSVM---VCHKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 131
                     6799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.1E-945275IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.1E-3644135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-2847131IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-1950131IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-1850132IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.11E-27138239IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.36E-34138264No hitNo description
SMARTSM011381.5E-40138283IPR014889Transcription factor DP, C-terminal
PfamPF087811.4E-30139257IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEMDLIVTPE KQRNRHAVRL VKTPVRRKLI ADDDDDDDHE KKGQSRTTGG GLRQFSVMVC  60
HKLEAKKITT YKEVADEIIS DFATIKQNAE KPLNENEYNE KNIRRRVYDA LNVFMALDII  120
ARDKKEIRWK GLPITCKKDV EEIKRDRNKV MNSVQKKTAF LKDLREKVSS LESLMLRNQE  180
MVVKTEGPAE GFTLPLILLE TNPHAVVEIE ISEDMQLVHL DFNSTPFSVH DDAYILKLMQ  240
EHKLQQNRAS SSSSTHHQSQ HSSSSSCIAS GTSGPLCWNS RSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2541133390PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130705.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130705.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_013725185.10.0transcription factor-like protein DPA
SwissprotQ9FNY31e-172DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A397ZQR70.0A0A397ZQR7_BRACM; Uncharacterized protein
TrEMBLM4CND80.0M4CND8_BRARP; Uncharacterized protein
STRINGBra005726.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-169Transcription factor DP