PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130421.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22172.5 Da    PI: 9.666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.8e-151862650
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +  r++tfskR+ g++KK +E+  LC++e + ++fs +gk y+++
  XP_009130421.1 18 YAARKITFSKRKSGLFKKMNEIVSLCNVETSFLVFSDSGKPYTFA 62
                    5679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.292565IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-17564IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-20679IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-14727IPR002100Transcription factor, MADS-box
PfamPF003191.2E-171961IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-142742IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-144263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRSTKGKQKI EMKKVGAYAA RKITFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT  60
FAYPSLEEAV GQFKNPLRHE PSATINTRPL VEAYKRQKNQ DLMERYMDLV EELEINNEKE  120
KILKKIIKEN KEKILWNIPP AECLSVEEKK WMRQTFVGLH VFLSDMALKC FGNDGDGSSS  180
SQESRGRDGE TYA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130421.11e-143PREDICTED: MADS-box transcription factor 23
RefseqXP_013682785.11e-143MADS-box transcription factor 23-like
RefseqXP_013731636.11e-143MADS-box transcription factor 23
TrEMBLA0A078IN901e-141A0A078IN90_BRANA; BnaA05g37450D protein
TrEMBLA0A397ZN981e-141A0A397ZN98_BRACM; Uncharacterized protein
TrEMBLM4ET151e-141M4ET15_BRARP; Uncharacterized protein
STRINGBra031945.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-45AGAMOUS-like 57