PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130366.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 213aa    MW: 23548 Da    PI: 4.394
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.9e-19695197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk++   ++++s  +v+p ++ +e  ++   +kt  l+ ++g   W+v +   k+++++++++GW +Fv++ngL++gD+++F +dg+++f  +v +
  XP_009130366.1  6 FFKIF--LSHFSSESMVIPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--IKRRDEVYFGQGWAKFVEDNGLRDGDVLTFVYDGSRSF--TVDI 94
                    88988..89999999*********99998..8889****977769******..999999***************************98888..7766 PP

                    E CS
              B3 97 f 97
                    +
  XP_009130366.1 95 Y 95
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-22396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-20396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-18495No hitNo description
PROSITE profilePS5086313.606498IPR003340B3 DNA binding domain
SMARTSM010191.6E-21698IPR003340B3 DNA binding domain
PfamPF023621.4E-16695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRDEVY  60
FGQGWAKFVE DNGLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDKE  120
DTNTSSEPEI AQTVPNATNQ EDSNIIEPEG AQRVPRTRNK GKKRVVVQDS DDSFISEDSD  180
SLSDSSYSPP NDDTLLDVTP KVTNSRKKGL TKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1469611100At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130366.11e-156PREDICTED: B3 domain-containing protein At3g06220-like, partial
TrEMBLA0A078I3191e-130A0A078I319_BRANA; BnaA01g07410D protein
STRINGBo1g016660.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.15e-41B3 family protein