PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130326.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 456aa    MW: 50658.4 Da    PI: 4.8385
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.9e-35181102103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++e++sws+ ++sfvv++  efa+  LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_009130326.1  18 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWNVPEFARLFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFIRGQKQLLKS 103
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_009130326.1 104 IVRRKPS 110
                     ***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5714107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGSNSESVST VVSSIPPFLS KTYDMVDDPL TDEVVSWSSG NKSFVVWNVP EFARLFLPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFIRGQKQL LKSIVRRKPS QVQPPQQPQV  120
QHSSVGACVE VGKFGLEEEV ERLQRDKNVL TQELVRLRQQ QQVTEHHLQN VGQKVHVMEQ  180
RQQQMMSFLA KAVQSPGFLN QFSQQNNEGN NQHVSEGNKK RRLPAEEQKF SGGYGANGLS  240
RQIVRYQSSM NEAADTMLEQ IHNMSNPQSR QEPLSNNHGS FLLGDVPNIS DNGSSTNGAS  300
GVTLADVSSN PPINYHVPCE ANQILEGSLP YSQVDLLSPN QGAAYGSSNS DVVGCETDNG  360
ECLDPIMAVL AGSMGLEASA VNELLPGVQD PLWEQFFGER PVIGDTEELL SGSVDDGLIM  420
EQLELQSNLR NVLSNNQQMN HLTEQMGFLT SDALRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-241311015123Heat shock factor protein 1
5d5u_B1e-241310724129Heat shock factor protein 1
5d5v_B1e-241310724129Heat shock factor protein 1
5d5v_D1e-241310724129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130326.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLM4ET930.0M4ET93_BRARP; Uncharacterized protein
STRINGBra032023.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]