PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130190.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 266aa    MW: 29844.3 Da    PI: 7.7199
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22.1e-36251152101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed++++++isw+e+g+sfvv+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkk+  ++         weF+++ Fk+g+k+ll++
  XP_009130190.1  25 FLTKTFNLVEDPSTNDVISWNEDGSSFVVWNQTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKIVPDR---------WEFSNEFFKRGEKRLLRD 110
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_009130190.1 111 IQRRK 115
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.97E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSPPSDNSYT TMATNESQRT APTPFLTKTF NLVEDPSTND VISWNEDGSS FVVWNQTDFA  60
KDLLPKHFKH NNFSSFVRQL NTYGFKKIVP DRWEFSNEFF KRGEKRLLRD IQRRKLTTQA  120
AVSPPRSQVV VAAQTAKMVV SPSSSGEEQA MSPSSSSTGN GGLSTELLEE NERLRSENIQ  180
LSRELAQMKS LYGNIFGLMS NYAGASSSSH EMMMDIEEEA SPRLFGVSIG LKRTRSEGVH  240
VKTVSTAAEE TPWLRHYNLA NQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-262511429129Heat shock factor protein 1
5d5v_B3e-262511429129Heat shock factor protein 1
5d5v_D3e-262511429129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.16610.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130190.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-122HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM4EKH40.0M4EKH4_BRARP; Uncharacterized protein
STRINGBra029291.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-105heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]