PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130189.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 255aa    MW: 28871.1 Da    PI: 8.4764
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36161062101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed++++++isw+e+g+sfvv+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k+ll++
  XP_009130189.1  16 FLTKTFNLVEDPSTNDVISWNEDGSSFVVWNQTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNEFFRRGEKRLLRD 101
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_009130189.1 102 IQRRK 106
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-39599IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MATNESQSQR TAPTPFLTKT FNLVEDPSTN DVISWNEDGS SFVVWNQTDF AKDLLPKHFK  60
HNNFSSFVRQ LNTYGFKKVV PDRWEFSNEF FRRGEKRLLR DIQRRKLTPQ AAGSPPRREV  120
VAAQTAKTAV SPSSSGEDQT MSPSSWTGSG GLSEELLEEN EKLRSQNKEL NRELAQMKFL  180
YGNIFGLMSN YAGASSSHEM MTEIEEEESS PRLFGVSIGL KRTRSEGVHV KTVSTAAEET  240
PWLRHSNRAN QRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-261610529129Heat shock factor protein 1
5d5v_B2e-261610529129Heat shock factor protein 1
5d5v_D2e-261610529129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.16610.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130189.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-117HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM4EKH50.0M4EKH5_BRARP; Uncharacterized protein
STRINGBra029292.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-99heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]