PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130171.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 325aa MW: 37084.1 Da PI: 8.9882

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.8	6e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv + ++++ +++ evd +k+ePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_009130171.1 16 LPPGFRFHPTDEELITQYLHKKVLDISFSA-KAVGEVDFNKSEPWELPWMAKMGEKEWYFFCVRDKKYPTGLRTNRATEAGYWKATGKDKEIYR- 108 79************************99.88***********8888899***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkg+kt+Wvmhe+rle XP_009130171.1 109 GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEFRLE 142 999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-62	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.54	16	166	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MESFCEFQKE EEQIDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAVGE VDFNKSEPWE 60 LPWMAKMGEK EWYFFCVRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEFR LEGKLSAHNL PKTAKNEWVI CRVFQKTAGG KKIPISSLIR 180 IGSLGTGFNP SPLPHLTDNS SYNDKTKTEP VYVPCFSNQT DQAQGNTLNG FISPVLNSIQ 240 ADIFHRIPLY QSPMLAQERS VLQAMVDNNT RQSLKAMSVS QETAVSTDMK TDTSSDFEYG 300 KRRLNAQGDP YSSTGLVDLE PFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	4e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	4e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	4e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	4e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	5e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	5e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130171.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966745	0.0	KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130171.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M4EKJ6	0.0	M4EKJ6_BRARP; Uncharacterized protein
STRING	Bra029313.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]