PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130040.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 380aa    MW: 42853.6 Da    PI: 4.7885
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.6e-131350542
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    n+   + tf kR++g+lKKA+ELS+L +++v+ +i s 
  XP_009130040.1 13 NSAAMNQTFRKRKKGLLKKANELSTLYGVKVCAVINSC 50
                    6666677**************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-13161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.194149IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-18396IPR002100Transcription factor, MADS-box
PfamPF003196.4E-141251IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPRGRIKIEP MTNSAAMNQT FRKRKKGLLK KANELSTLYG VKVCAVINSC DSTEPPEFWP  60
SKEGAEAVHS AFMGVLPEER CKRMYDQERH LEERIQKGQD RVMRLHTENR EIELTEVMFD  120
LLKGKTLMPD QYGDPSFMRD LNLFIGDYVK NISHRIEFLE ANGEPVPPNV AATDASGPVV  180
GDANPFVVET EGLVSNPTEA YDHMRQYDGM DMSVNEQALG GFNDHVHHQE PFQYQTPTNF  240
YDQTQPMFYG SSQGMDMNHQ EPFQYQGPAN FDDQTQPMFY GSSQDKYTGL NHDQGQSSNQ  300
YPNSNQSFMS LLMGQPQQMS DVEEPARVAS MGDNNNGYHQ LLVTSQMPST TTTTTTTTAA  360
ATDLSGHRIN NGWPTRFGLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130040.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLM4DVK60.0M4DVK6_BRARP; Uncharacterized protein
STRINGBra020550.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-40AGAMOUS-like 36