PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130036.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 380aa    MW: 42778.5 Da    PI: 4.9469
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      n++ r+ tf kR++g+lKKA+ELS+L +++v+ +i s 
  XP_009130036.1 11 MTNSTARNQTFRKRKKGLLKKANELSTLYGVKVCAVINSC 50
                    6799*******************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.68149IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-16161IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-20396IPR002100Transcription factor, MADS-box
PfamPF003191.6E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPRGRIKIEP MTNSTARNQT FRKRKKGLLK KANELSTLYG VKVCAVINSC DSTEPPEFWP  60
SKEGAEAVHS AFMGVLPEER CKKMYDQERH LEERIQKGQA KAMRLQAENR EIELREVMFD  120
LFKGETLKPH HYDDPCFIGE LNHFIGDYVK NLSHRIEFLE ANGEPVPPNV AATDASGPVV  180
GDANPFVVGT EGLVSNPTEA YDHMRQFDGM DMSVKEEAPG GFNDHVHHQN MNHQEPFQYQ  240
TSTNSYDQTQ PMFYGSSQDM NMNLEEPFQY QTPANFDDQT QPMFYGSNQD MYTGLNHDQG  300
QSSNQYPNSN QSFVGLLMGQ PQQMSDGQDP AIVASMDDKN NGYHQPLITS QMPLTTTAAA  360
AADLSGHRIN NGWLTRLGLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130036.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130036.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A3P6B3I60.0A0A3P6B3I6_BRACM; Uncharacterized protein
STRINGBra020550.1-P0.0(Brassica rapa)
STRINGBra020552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.19e-43AGAMOUS-like 36