PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009129850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 263aa MW: 29126.3 Da PI: 4.4253 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.1 | 8.4e-12 | 16 | 55 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 e k +r v +skRr++++ K EL+ L +a++av + s+ XP_009129850.1 16 ETKEQRAVAYSKRRKTLFSKSAELCCLSGANIAVFVTSPG 55 77899*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-17 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.624 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.40E-21 | 6 | 73 | No hit | No description |
PRINTS | PR00404 | 4.2E-6 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-16 | 7 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-11 | 16 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-6 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-6 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MARGGTKRKI EIKKRETKEQ RAVAYSKRRK TLFSKSAELC CLSGANIAVF VTSPGDKPNV 60 ASSFSGHASA SEIVDCYFNG TLPPKISGPE SKSGFWWTDP DLYSSCDDLS QLDVIEDLIK 120 RTKKDLMDCL EKQEKSRVCC FDSHQNPNSS SQAVTMYQNT SKPLDGSSQV IYGGESSSGQ 180 SRYLVNKDVG NCLWETKKEN NLIMSVPQET EQTQSIINVD GGDEGQSFWD ELCDEDMFGL 240 NNGEDDVMID IGEFLNEIES GES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 29 | KKRETKEQRAVAYSKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009129850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018512013.1 | 0.0 | PREDICTED: uncharacterized protein LOC103854647 | ||||
TrEMBL | M4DVQ6 | 0.0 | M4DVQ6_BRARP; Uncharacterized protein | ||||
STRING | Bra020600.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 1e-68 | M-type_MADS family protein |