PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009129392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 486aa MW: 55123.3 Da PI: 7.6498 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 240 | 286 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed ll ++v+++G+++W+ Ia++++ gR +kqc++rw+++l XP_009129392.1 240 KGQWTSDEDRLLMQLVRLHGTKRWSQIAKMLQ-GRVGKQCRERWHNHL 286 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 292 | 334 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd +l++a+k+ G++ W+ Iar+++ gRt++ +k++w+ XP_009129392.1 292 KDSWSEEEDMILIEAHKEIGNR-WAEIARKLP-GRTENTIKNHWN 334 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.986 | 235 | 290 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 237 | 333 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 239 | 288 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-28 | 241 | 294 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.3E-18 | 243 | 300 | No hit | No description |
CDD | cd00167 | 1.55E-14 | 243 | 286 | No hit | No description |
PROSITE profile | PS51294 | 20.793 | 291 | 341 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 291 | 339 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.96E-13 | 294 | 337 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 295 | 339 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1904095 | Biological Process | negative regulation of endosperm development | ||||
GO:2000692 | Biological Process | negative regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MEFQSVIKMH YPYLASVIFD ENFTLKDVQP SLTDDASCVQ NMHHKPFHAN LDRSHVPSIV 60 NPDLCPKNLT LKISNTTSDH IPNLNISPRH YDMQPHSFDT LSKDIFNGIT PSPCTEAFEA 120 YLRGISNDQD FFDMACNTSQ PVEPNDLPNI SHVPRDNTMW ENNKNQGIIF GTESIFNLAM 180 VDCNLYGAPK PIGILGANED TIMNQHHNNQ IMIRADQIKK NKRFQMRRGS KLTRKASIIK 240 GQWTSDEDRL LMQLVRLHGT KRWSQIAKML QGRVGKQCRE RWHNHLRPDI KKDSWSEEED 300 MILIEAHKEI GNRWAEIARK LPGRTENTIK NHWNATKRKQ HSRKSKGKDE VSLALGSNAL 360 QNYIRSVTYN DDTLMTAASN SNGNNGRRNV RGKGKNVIVD ALDYNKKNDE NECKYIVDGV 420 MNLDLEKSTI CVSRSTSASG STSGSGSGVT MEVDEPMADS WMVMHGCDEV MMNEIALLEM 480 IARGHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-44 | 238 | 340 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryos from the early heart stage and throughout embryogenesis (PubMed:18695688, PubMed:19066902). Induced at the onset of the maturation phase in the endosperm, in a high and homogeneous repartition (PubMed:18695688, PubMed:19066902, PubMed:25194028, PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in siliques (PubMed:18695688, PubMed:19066902). Also detected at low levels in leaves and flowers (PubMed:19066902). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00385 | DAP | Transfer from AT3G27785 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009129392.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129392.1 | 0.0 | PREDICTED: uncharacterized protein LOC103854215 | ||||
Refseq | XP_013720880.1 | 0.0 | transcription factor MYB118-like | ||||
Swissprot | Q9LVW4 | 0.0 | MY118_ARATH; Transcription factor MYB118 | ||||
TrEMBL | A0A3P6AHG5 | 0.0 | A0A3P6AHG5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EW44 | 0.0 | M4EW44_BRARP; Uncharacterized protein | ||||
STRING | Bra033027.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6052 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 0.0 | myb domain protein 118 |
Publications ? help Back to Top | |||
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