PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129204.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 377aa    MW: 41565.6 Da    PI: 9.3818
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like841.6e-26184237155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W+ eLH++Fv+a+++L G+ekA+Pk+ilelm+v++L++e+v+SHLQkYRl
  XP_009129204.1 184 KSRVVWSMELHQQFVKAINHL-GIEKAVPKRILELMSVPSLSRENVASHLQKYRL 237
                     68*******************.********************************8 PP
2Response_reg70.76e-24131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++   ++ G
  XP_009129204.1  13 VLVVDDDASCLIILEKMLLRLMY-QVTICSQADVALTLLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTATVMTGINHG 105
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  XP_009129204.1 106 ACDYLIKPIRLEELKN 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1381366IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23009.4E-4010152No hitNo description
SuperFamilySSF521727.4E-3410136IPR011006CheY-like superfamily
SMARTSM004482.9E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.67912127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.19E-2614126No hitNo description
PROSITE profilePS512949.141181240IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-27181242IPR009057Homeodomain-like
SuperFamilySSF466891.74E-18182241IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24184237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTISDQFPCG LRVLVVDDDA SCLIILEKML LRLMYQVTIC SQADVALTLL RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTATVMT GINHGACDYL IKPIRLEELK  120
NIWQHVVRRK CTINKNSISS SSSSLGSLFS VSGVSEGSLK RRKNKRRVDS EEDDLLDPGN  180
SSKKSRVVWS MELHQQFVKA INHLGIEKAV PKRILELMSV PSLSRENVAS HLQKYRLYLK  240
RLSGAASQSR DAESMERYEN IQAMVSSGQI HPQALAALYG RPIDNHMSGG FGVWIPTDNH  300
LGGSNVSSAS NRCFGALDSP SSVAASMSVH GLSSSGNVRQ QGNGFSNNTD YRIRQGNGSG  360
ISEESWILGR PLRQRKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21181243264ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.82780.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532221e-122AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129204.10.0PREDICTED: two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y31e-177ARR14_ARATH; Two-component response regulator ARR14
TrEMBLM4ECX50.0M4ECX5_BRARP; Two-component response regulator
STRINGBra026635.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-173response regulator 14