PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128959.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 361aa    MW: 40550.2 Da    PI: 6.1121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.8e-07124144526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C  Gd+C FaHg
  XP_009128959.1 124 ACPDFRK-GGCVKGDSCEFAHG 144
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313119146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4124144IPR000571Zinc finger, CCCH-type
SMARTSM003560.53154177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568154178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMIGDTRRTY PTVEIPTWPV SEDFTAGDVY SPVMNSPDCS MLEALAALQR YLPSNEPDPD  60
SDPDLFGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYSY  120
SGTACPDFRK GGCVKGDSCE FAHGVFECWL HPARYRTQPC KDGGNCRRRV CFFAHSPDQL  180
RYLPNRSPDR VDSFDVSSPM RHSCARAFQL SISPVSGSPP VSPRADSGSQ SLSRSLGSNS  240
INDVVSSFRN LQFEKVKSFP PSYNNPLRCY QSGFGSPRGS ILGPGFQSLP TTPTRPGNMD  300
IWENGIEEEP AMERVVESGR ELRAKMFEKL SKENCMDRVE PDPDHNSGEG PDVEWVSELV  360
M
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.168450.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528160.0AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128959.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM4D3N30.0M4D3N3_BRARP; Uncharacterized protein
STRINGBra011087.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]