PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128723.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 344aa    MW: 38713.6 Da    PI: 6.7611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.2e-19695197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk++   ++++s  +v+p ++ +e  ++   +kt  l+ ++g   W+v +   k+++++++++GW +Fv++ngL++gD+++F +dg+++f  +v +
  XP_009128723.1  6 FFKIF--LSHFSSESMVIPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--VKRRDEVYFGQGWAKFVEDNGLRDGDVLTFVYDGSRSF--TVDI 94
                    88888..89999999*********99998..8889****977769******..9999*****************************98888..7766 PP

                    E CS
              B3 97 f 97
                    +
  XP_009128723.1 95 Y 95
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-20396IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.676498IPR003340B3 DNA binding domain
CDDcd100176.46E-17495No hitNo description
SuperFamilySSF1019361.53E-21496IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-21698IPR003340B3 DNA binding domain
PfamPF023624.9E-16695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-6245332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-8245328IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.077251341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMVKRRDEVY  60
FGQGWAKFVE DNGLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDKE  120
DTNTSSEPEM AQTVPNARNQ EDSTIIEPEV AQRVPRTRNK GKKRVVVQDS DDSFISEDSD  180
SLSDSSYSPP NDDTLLDVTP KVTNSRKKGE LRSVNSNVGS TSNSSGSVSR KRQSTIKNPE  240
VYLDDPNNVC FEIIIKNRIY ELNVPKQIVK DYCLKFQAYV CYIDNHGKLE ARAATWQDQR  300
VTIKKWERIC KRNGLKKGDR LLCEIFRKEG LVYAVKIHVV ATTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-1469611100At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128723.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLM4D3Q60.0M4D3Q6_BRARP; Uncharacterized protein
STRINGBra011110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.15e-43B3 family protein