PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009128407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 28059.4 Da PI: 4.6116 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 41 | 3.8e-13 | 102 | 151 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W KYGqK++k s + r +C+++k+v++ ++ p+v +tY g+H +e XP_009128407.1 102 NDGFSWMKYGQKKIKTSSHQR--------NCNATKRVQQIQDSPSVYRTTYVGKHMCE 151 8****************9977........7*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-14 | 96 | 152 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.671 | 96 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-15 | 98 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-17 | 101 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-12 | 102 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MFHGADRAVE ALLRGQESAN LLKTVLEHQR TSSVSIEPLF DTVLDSFSYA LSLFASSNPQ 60 PLCESSQNKP TPVVARKSPK KNSHGEEGLE QYNHDSPTPI CNDGFSWMKY GQKKIKTSSH 120 QRNCNATKRV QQIQDSPSVY RTTYVGKHMC EVNAFLQPNE DIVNGSKMIR FDKTDQGMPE 180 PVMPQLVPVE QEALIIEGTD QIMNLECGSN EFLVDDDQLW EYQFPPCSPG DFMFLDDLSE 240 FDYNPFHV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009128407.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF430072 | 1e-167 | KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128407.1 | 0.0 | PREDICTED: probable WRKY transcription factor 67 | ||||
Swissprot | Q93WV7 | 6e-74 | WRK67_ARATH; Probable WRKY transcription factor 67 | ||||
TrEMBL | M4CW59 | 0.0 | M4CW59_BRARP; Uncharacterized protein | ||||
STRING | Bra008456.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66550.2 | 6e-71 | WRKY DNA-binding protein 67 |